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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124568918_124569450_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124568918 - 124569450
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
AGGCCACTGATA
Flanking Amino Acid:
YLEGGIDSCQGDSGGPLVTN
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
77.8
0.63
1
73.4
41.3
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
42.7
-0.5
1.8
49
34.7

Associated Gene:

Gene:
TMPRSS2
Ensembl Gene ID:
ENSAPLG00000016160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038564
124557512 - 124569624
12113
ENSAPLT00000027642
124549062 - 124569624
20563
ENSAPLT00000016878
124551721 - 124569624
17904
ENSAPLT00000038937
124549062 - 124569787
20726