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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124576591_124577306_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
124576591 - 124577306
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTATGTCTT
5'SS Class:
weak_major
3'SS Sequence:
GTTCTTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ACTTCCTGACTT
Flanking Amino Acid:
PAIVILNNVIRLVEEKFLEL
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.4
65.7
45.5
Major BPS
75.1
0.62
1
65.6
41
Major PPT
75.7
0.58
0.8
74.1
31.1
Minor 5ss
48.1
-0.2
2.8
72
37.9
Minor BPS
58.6
0.35
1.8
75
42.1

Associated Gene:

Gene:
MX1
Ensembl Gene ID:
ENSAPLG00000015976
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039235
124572503 - 124588790
16288
ENSAPLT00000016707
124572503 - 124588790
16288