Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124588535_124588609_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

124588535 - 124588609

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTATGTATA

5'SS Class:

major

3'SS Sequence:

TGTGCCAGAGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AATATAT

U12 Branch Point Sequence:

GGATGATGAAAT

Flanking Amino Acid:

KDGFQSLSSPTTKESQHKQK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.51

73.8

36.6

Major BPS

62.6

0.31

59.1

37.6

Major PPT

0.18

1.1

52.5

41.4

Minor 5ss

47.6

-0.2

2.5

40.2

Minor BPS

42.6

-0.4

2.1

58.62

43.1

Associated Gene:

Gene:

MX1

Ensembl Gene ID:

ENSAPLG00000015976

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039235

124572503 - 124588790

16288