About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124607326_124608526_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124607326 - 124608526
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTAATTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTGTAATTAATT
Flanking Amino Acid:
SAKFFDMWEGEHSGEMATFI
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
69.1
0.43
1
63.2
42.1
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
58.1
0.33
1.8
75.18
41.3

Associated Gene:

Gene:
FAM3B
Ensembl Gene ID:
ENSAPLG00000015920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016612
124605572 - 124618946
13375