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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124608578_124610716_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124608578 - 124610716
Intron Length:
2139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
GRGINIAIVNYKTGKVISAK
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
72.7
38.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.5
0.84
0.8
81.9
33.4
Minor 5ss
37.6
-1.4
2.8
48.4
41.7
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
FAM3B
Ensembl Gene ID:
ENSAPLG00000015920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016612
124605572 - 124618946
13375