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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124610776_124612163_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124610776 - 124612163
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
ATTTCAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTATTTCAATT
Flanking Amino Acid:
NLAKICFEDELIISEEKGNV
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.2
37.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.6
0.62
0.9
67.9
41.9
Minor 5ss
39.9
-1.1
2.8
57.3
39.7
Minor BPS
62.7
0.48
1.5
80.28
35.9

Associated Gene:

Gene:
FAM3B
Ensembl Gene ID:
ENSAPLG00000015920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016612
124605572 - 124618946
13375