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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124612288_124613150_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124612288 - 124613150
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATATAAT
5'SS Class:
major
3'SS Sequence:
TTTGTTGTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATGT
Flanking Amino Acid:
QDIGKKPVLKAPAPKRQKCD
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
73
37.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.5
0.71
0.9
77.2
37.1
Minor 5ss
42.4
-0.8
2.7
50.5
46.1
Minor BPS
62
0.46
1.9
81.65
40.2

Associated Gene:

Gene:
FAM3B
Ensembl Gene ID:
ENSAPLG00000015920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016612
124605572 - 124618946
13375