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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124625008_124625331_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124625008 - 124625331
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCCCTTTTAAAA
Flanking Amino Acid:
MPKNKGKGGKNRRRG
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.2
0.46
1
64.9
40.2
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
49.7
-0
1.4
52.65
40

Associated Gene:

Gene:
EIF1AY
Ensembl Gene ID:
ENSAPLG00000029362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046659
124624061 - 124630114
6054
ENSAPLT00000042405
124624061 - 124632165
8105
ENSAPLT00000034179
124624061 - 124630114
6054