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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124627273_124628767_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124627273 - 124628767
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTACTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATATGCTTACTC
Flanking Amino Acid:
CHIRGKLRKKVWINTSDIIL
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
83.9
0.76
0.8
80.9
30.9
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
51.9
0.04
2
65.29
40.7

Associated Gene:

Gene:
EIF1AY
Ensembl Gene ID:
ENSAPLG00000029362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042405
124624061 - 124632165
8105
ENSAPLT00000046659
124624061 - 124630114
6054