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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124627273_124629761_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124627273 - 124629761
Intron Length:
2489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
AATCTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AAATCTTTATTT
Flanking Amino Acid:
CHIRGKLRKKDNKADVILKY
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.7
0.51
0.9
71
39.1
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
60.9
0.42
1.5
72.35
38.8

Associated Gene:

Gene:
EIF1AY
Ensembl Gene ID:
ENSAPLG00000029362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034179
124624061 - 124630114
6054