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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124628819_124629761_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124628819 - 124629761
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
AATCTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AAATCTTTATTT
Flanking Amino Acid:
IILVGLRDYQDNKADVILKY
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.7
0.51
0.9
71
39.1
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
60.9
0.42
1.5
72.35
38.8

Associated Gene:

Gene:
EIF1AY
Ensembl Gene ID:
ENSAPLG00000029362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046659
124624061 - 124630114
6054
ENSAPLT00000042405
124624061 - 124632165
8105