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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124629844_124629950_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124629844 - 124629950
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
AATGCTTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
CATTCCTTAACT
Flanking Amino Acid:
LKAYGELPEHAKINETDTFG
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
80.7
31.6
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
73.7
0.53
0.9
70.5
40.3
Minor 5ss
38.2
-1.3
3.1
49.9
40.6
Minor BPS
87.9
1.27
1
93.36
34.7

Associated Gene:

Gene:
EIF1AY
Ensembl Gene ID:
ENSAPLG00000029362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046659
124624061 - 124630114
6054
ENSAPLT00000042405
124624061 - 124632165
8105
ENSAPLT00000034179
124624061 - 124630114
6054