Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12466460_12466877_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12466460 - 12466877

Intron Length:

418

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTGAGTACC

5'SS Class:

major

3'SS Sequence:

TTTGTGACAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAC

U12 Branch Point Sequence:

TTTGTGACAACA

Flanking Amino Acid:

QAQRVSYNVPLEARMKGVLL

Intron Amino Acid Position:

3392

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

68.2

36.6

Major BPS

71.3

0.53

1.2

63.1

44.5

Major PPT

69.1

0.43

63.5

41.8

Minor 5ss

34.5

-1.8

2.8

48.2

40.4

Minor BPS

43.2

-0.5

2.4

63.87

42.6

Associated Gene:

Gene:

RELN

Ensembl Gene ID:

ENSAPLG00000011317

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047207

12456661 - 12742790

286130

ENSAPLT00000011979

12456661 - 12742790

286130