Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12472303_12472840_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12472303 - 12472840

Intron Length:

538

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGGC

5'SS Class:

strong_major

3'SS Sequence:

CTCATGTTAATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAA

U12 Branch Point Sequence:

TTGTATTTAACT

Flanking Amino Acid:

PSQLVDTFDDEGTSHEENWS

Intron Amino Acid Position:

3063

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

38.4

Major BPS

79.5

0.73

0.9

36.9

Major PPT

0.36

61.4

38.8

Minor 5ss

30.9

-2.2

3.3

38.6

Minor BPS

0.89

1.4

88.78

36.1

Associated Gene:

Gene:

RELN

Ensembl Gene ID:

ENSAPLG00000011317

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011979

12456661 - 12742790

286130

ENSAPLT00000047207

12456661 - 12742790

286130