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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12473084_12473403_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12473084 - 12473403
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTACTAAATC
Flanking Amino Acid:
GVLLDYSIDGGISWTLLHEM
Intron Amino Acid Position:
2982

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.2
23.6
Major BPS
100
1.24
0.5
100
0
Major PPT
81.9
0.72
0.8
74.5
35
Minor 5ss
25.7
-2.8
3.6
34.4
41.2
Minor BPS
60.5
0.31
1.8
72.57
38.5

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011979
12456661 - 12742790
286130
ENSAPLT00000047207
12456661 - 12742790
286130