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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12473511_12475817_R

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12473511 - 12475817
Intron Length:
2307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTCGT
5'SS Class:
major
3'SS Sequence:
CATTTACTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGATCTTTAATA
Flanking Amino Acid:
VTQDLDLRGAKFLQYWGRIG
Intron Amino Acid Position:
2946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
68.1
42.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
73
0.52
0.8
70.6
34.7
Minor 5ss
43.7
-0.7
2.8
58.6
40.1
Minor BPS
71.8
0.68
1.1
71.42
34.4

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130