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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124743833_124745808_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124743833 - 124745808
Intron Length:
1976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTAATGTGAATT
Flanking Amino Acid:
SRSRSPRWKQRSLSPAFRSP
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.9
0.67
0.8
78.4
35.5
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
47.8
-0
2.1
70.05
41

Associated Gene:

Gene:
BCLAF3
Ensembl Gene ID:
ENSAPLG00000005332
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031050
124743759 - 124763122
19364
ENSAPLT00000005512
124743759 - 124764578
20820