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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124746388_124746730_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124746388 - 124746730
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGGAA
5'SS Class:
major
3'SS Sequence:
TATGTCAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
TTTATGTCAACA
Flanking Amino Acid:
EFTSRSSLQKRYPEDHDYRE
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.3
35.3
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
65.8
0.36
1
59.1
40.6
Minor 5ss
34
-1.8
3.6
45.7
49.5
Minor BPS
50.2
0
2.2
71.99
40

Associated Gene:

Gene:
BCLAF3
Ensembl Gene ID:
ENSAPLG00000005332
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005512
124743759 - 124764578
20820
ENSAPLT00000031050
124743759 - 124763122
19364