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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12476768_12477449_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12476768 - 12477449
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTACGTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
GTTTCTGTACGT
Flanking Amino Acid:
TYSLPENLVGNPVRFRFYQK
Intron Amino Acid Position:
2828

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
66.4
0.41
1
61.3
37
Major PPT
68.1
0.41
1
62.7
38.7
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
46.2
-0.2
2.4
71.8
45.5

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011979
12456661 - 12742790
286130
ENSAPLT00000047207
12456661 - 12742790
286130