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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124772841_124795399_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124772841 - 124795399
Intron Length:
22559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CAGTCAGTAATT
Flanking Amino Acid:
MVEAIVEFDYK
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
62.3
43.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
83.5
0.75
0.7
81.7
30.3
Minor 5ss
28.7
-2.4
2.7
25.5
36.2
Minor BPS
47.5
-0.1
2.2
65.88
45

Associated Gene:

Gene:
SH3KBP1
Ensembl Gene ID:
ENSAPLG00000007164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029641
124772837 - 124989639
216803