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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12482319_12483677_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12482319 - 12483677
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTCCTCCACA
Flanking Amino Acid:
GHGKCTQDNCVCDEHWGGLY
Intron Amino Acid Position:
2495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.56
1.1
68
37.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
85.4
0.8
0.7
80.5
24.8
Minor 5ss
35
-1.7
3.2
42.4
44.3
Minor BPS
67.6
0.55
2
83.78
36.8

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130