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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12483819_12487334_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12483819 - 12487334
Intron Length:
3516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCTCTG
5'SS Class:
major
3'SS Sequence:
TTCTCCCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTACTAC
U12 Branch Point Sequence:
TCTCCCCCAAAG
Flanking Amino Acid:
RITLPLPPYTRSQATRFRWH
Intron Amino Acid Position:
2448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.2
65.3
46
Major BPS
43.8
-0.3
1.4
38.5
40.9
Major PPT
67.2
0.39
1
67.5
26.5
Minor 5ss
49.5
-0
2.5
67.2
43.9
Minor BPS
46.2
-0.4
2
55.66
44.8

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130