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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124848349_124881925_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124848349 - 124881925
Intron Length:
33577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTCCTTCATT
Flanking Amino Acid:
SETIIRTNKKGERNRRRRCQ
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76.4
0.59
0.9
70.6
39.7
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
73.9
0.84
1.7
88.65
36.5

Associated Gene:

Gene:
SH3KBP1
Ensembl Gene ID:
ENSAPLG00000007164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029641
124772837 - 124989639
216803
ENSAPLT00000007452
124798431 - 124989287
190857
ENSAPLT00000007449
124793814 - 124989287
195474