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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12487504_12489801_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12487504 - 12489801
Intron Length:
2298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGACT
5'SS Class:
major
3'SS Sequence:
TTTCCACCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GAATCTCTAACT
Flanking Amino Acid:
ASCSVTDSCYAIELEYSVDL
Intron Amino Acid Position:
2392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.7
39
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
73.3
0.53
0.7
71.1
28.8
Minor 5ss
35.1
-1.7
3.2
47.1
42.5
Minor BPS
62.3
0.46
1.7
76.03
39.9

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130