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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124908293_124930325_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124908293 - 124930325
Intron Length:
22033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATAATTAATA
Flanking Amino Acid:
VDNDFVTVDKSAGKKLPPAT
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.4
31.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
93.1
0.97
0.7
92.4
26
Minor 5ss
39.2
-1.2
3
54
43.2
Minor BPS
57.3
0.22
1.8
68.23
37.4

Associated Gene:

Gene:
SH3KBP1
Ensembl Gene ID:
ENSAPLG00000007164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007449
124793814 - 124989287
195474
ENSAPLT00000029641
124772837 - 124989639
216803
ENSAPLT00000007452
124798431 - 124989287
190857