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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12491593_12494952_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12491593 - 12494952
Intron Length:
3360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACAA
5'SS Class:
major
3'SS Sequence:
CTCTCACTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACAGTAATT
Flanking Amino Acid:
MTRDLDLSQARFVQFFMRLG
Intron Amino Acid Position:
2222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
67.8
39.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
66.8
0.38
0.9
66.2
34.7
Minor 5ss
36.8
-1.5
3.1
47.7
47.7
Minor BPS
54.1
0.21
2.3
81.97
39.5

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130