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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124955964_124958105_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124955964 - 124958105
Intron Length:
2142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTAAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTATTAAATT
Flanking Amino Acid:
KLLPSDFEKERPKKPPPPSA
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72
0.5
1
68.4
41.7
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
57.6
0.32
1.8
77.31
39.6

Associated Gene:

Gene:
SH3KBP1
Ensembl Gene ID:
ENSAPLG00000007164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029641
124772837 - 124989639
216803
ENSAPLT00000007452
124798431 - 124989287
190857
ENSAPLT00000007449
124793814 - 124989287
195474