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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124969606_124980131_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124969606 - 124980131
Intron Length:
10526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGTTTTATTT
Flanking Amino Acid:
KDSSERSNDIDLEGFDSVVP
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.3
0.73
1
87.2
30.4
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
53.6
0.19
1.7
70.13
42.3

Associated Gene:

Gene:
SH3KBP1
Ensembl Gene ID:
ENSAPLG00000007164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029641
124772837 - 124989639
216803
ENSAPLT00000007452
124798431 - 124989287
190857
ENSAPLT00000007449
124793814 - 124989287
195474