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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124987324_124989245_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124987324 - 124989245
Intron Length:
1922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATCAGAAAT
Flanking Amino Acid:
EEKKIRLRLQMEVNDIKKAL
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
46.9
-0.1
1.8
67.8
42.3

Associated Gene:

Gene:
SH3KBP1
Ensembl Gene ID:
ENSAPLG00000007164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029641
124772837 - 124989639
216803
ENSAPLT00000007452
124798431 - 124989287
190857
ENSAPLT00000007449
124793814 - 124989287
195474