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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12499721_12502219_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12499721 - 12502219
Intron Length:
2499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTATC
5'SS Class:
major
3'SS Sequence:
TCTTGGACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATCTCTTGGACC
Flanking Amino Acid:
VNENTVIQFEINIGCTTDSS
Intron Amino Acid Position:
2023

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
78.3
36.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.5
0.42
1
58.7
41.9
Minor 5ss
39.3
-1.2
3
54.6
42.6
Minor BPS
60.8
0.32
1.5
68.44
37.3

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130