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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12502323_12502417_R

Intron Information:

Intron Rank:
39
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12502323 - 12502417
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGCATC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
LYCPYSSKGAPEEDSAMVFV
Intron Amino Acid Position:
1988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.4
67.4
44
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
45.8
-0.4
2.8
65.7
38.6
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130