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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125027767_125031200_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125027767 - 125031200
Intron Length:
3434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTC
Flanking Amino Acid:
TDADTAQSLKDMVSQKNTAS
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76
34.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.5
0.96
0.6
85.6
29.1
Minor 5ss
50.5
0.02
2.7
68.2
36.7
Minor BPS
60.6
0.31
1.5
68.94
37.7

Associated Gene:

Gene:
MAP3K15
Ensembl Gene ID:
ENSAPLG00000007410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026199
125003760 - 125085568
81809
ENSAPLT00000007776
125003760 - 125085568
81809