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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12504148_12504991_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12504148 - 12504991
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATAATGAACA
Flanking Amino Acid:
IQFSFKFIAKGTPERSHSIL
Intron Amino Acid Position:
1870

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
27.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.6
0.69
0.8
72.6
37.6
Minor 5ss
38.2
-1.3
3
48.6
47.1
Minor BPS
54.6
0.14
1.9
72.21
38.6

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130