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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125055810_125056794_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125055810 - 125056794
Intron Length:
985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGAAATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
AATGTTTCAATT
Flanking Amino Acid:
FESSMELRKIGVRLNSLLGR
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
76.2
39.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
72.8
0.51
1
65
45.1
Minor 5ss
42.5
-0.8
3.2
59.7
45.1
Minor BPS
51.3
0.12
1.6
66.92
38.5

Associated Gene:

Gene:
MAP3K15
Ensembl Gene ID:
ENSAPLG00000007410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026199
125003760 - 125085568
81809
ENSAPLT00000007776
125003760 - 125085568
81809