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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125057729_125058144_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125057729 - 125058144
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGATGT
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
GTTTTATTAAGG
Flanking Amino Acid:
KETTNGLRFPVLVIEPTKVY
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
66.6
40
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
85
0.79
0.7
77
31.7
Minor 5ss
41.9
-0.9
3.2
62.1
43.3
Minor BPS
54.8
0.01
2
64.88
42.8

Associated Gene:

Gene:
MAP3K15
Ensembl Gene ID:
ENSAPLG00000007410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026199
125003760 - 125085568
81809
ENSAPLT00000007776
125003760 - 125085568
81809