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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125062190_125063770_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125062190 - 125063770
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCTTTGATC
Flanking Amino Acid:
IYFSTENQCSRFCGLVKEIL
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.4
0.62
0.8
74.5
35.7
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
73.7
0.73
1.1
76.89
33.8

Associated Gene:

Gene:
MAP3K15
Ensembl Gene ID:
ENSAPLG00000007410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026199
125003760 - 125085568
81809
ENSAPLT00000007776
125003760 - 125085568
81809