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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125067462_125068017_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125067462 - 125068017
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTTTTTGATT
Flanking Amino Acid:
AIKEIPERDSRYSQPLHEEI
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.7
0.69
0.9
77.7
35.5
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
72
0.77
1.1
82.75
32.3

Associated Gene:

Gene:
MAP3K15
Ensembl Gene ID:
ENSAPLG00000007410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026199
125003760 - 125085568
81809
ENSAPLT00000007776
125003760 - 125085568
81809