About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125068146_125069592_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125068146 - 125069592
Intron Length:
1447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGTATC
5'SS Class:
major
3'SS Sequence:
TTAAATCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTTCTTAAAT
Flanking Amino Acid:
IKIFMEQVPGGSLSALLRSK
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.3
77.9
36.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
65.5
0.35
1
59.8
41.3
Minor 5ss
41.8
-0.9
2.6
54.4
42.8
Minor BPS
78
0.96
1.3
88.72
36.1

Associated Gene:

Gene:
MAP3K15
Ensembl Gene ID:
ENSAPLG00000007410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007776
125003760 - 125085568
81809
ENSAPLT00000026199
125003760 - 125085568
81809