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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12506959_12508394_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12506959 - 12508394
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
CTATTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATACATTCACT
Flanking Amino Acid:
RITVYLPPATYSPRTRFRWI
Intron Amino Acid Position:
1735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1
66.9
38.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83.5
0.75
0.8
77.1
36.9
Minor 5ss
38.4
-1.3
3
51.8
39.8
Minor BPS
51.6
0.13
2.1
74.08
41.9

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011979
12456661 - 12742790
286130
ENSAPLT00000047207
12456661 - 12742790
286130