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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125079754_125080394_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125079754 - 125080394
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTGATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGTTGCTGATGC
Flanking Amino Acid:
HVKHPISHLLSVPDEGLALE
Intron Amino Acid Position:
970

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
68.8
0.42
1.1
62.2
43.5
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
44
-0.4
2.3
59.84
45

Associated Gene:

Gene:
MAP3K15
Ensembl Gene ID:
ENSAPLG00000007410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026199
125003760 - 125085568
81809
ENSAPLT00000007776
125003760 - 125085568
81809