About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125081946_125082399_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125081946 - 125082399
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTCCTACAGCT
Flanking Amino Acid:
HLVLFGFQDAVNKVLRNHLI
Intron Amino Acid Position:
1091

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.3
33.7
Major BPS
74.2
0.6
1
67
39.4
Major PPT
80.2
0.68
0.9
73.8
40.8
Minor 5ss
36.5
-1.5
2.8
45.9
42.3
Minor BPS
47.9
-0
2
75.08
41.3

Associated Gene:

Gene:
MAP3K15
Ensembl Gene ID:
ENSAPLG00000007410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007776
125003760 - 125085568
81809
ENSAPLT00000026199
125003760 - 125085568
81809