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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125084794_125084908_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125084794 - 125084908
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
ATTTGCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATTTAGGAACA
Flanking Amino Acid:
QGADLDAIKRFAEEDYTLSI
Intron Amino Acid Position:
1267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
70.2
35.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
82.1
0.72
0.8
78.2
35.6
Minor 5ss
31.7
-2.1
3
31.6
42.5
Minor BPS
44.7
-0.4
2.2
60.96
38.5

Associated Gene:

Gene:
MAP3K15
Ensembl Gene ID:
ENSAPLG00000007410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026199
125003760 - 125085568
81809
ENSAPLT00000007776
125003760 - 125085568
81809