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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12508669_12508899_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12508669 - 12508899
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTCTCTTTTATT
Flanking Amino Acid:
DTALMFSENIGKPRFAETWD
Intron Amino Acid Position:
1644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
74.1
34.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.3
0.68
0.8
81.6
28.8
Minor 5ss
43.5
-0.7
3.1
57.4
41.8
Minor BPS
61.9
0.45
1.6
75.01
42.5

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011979
12456661 - 12742790
286130
ENSAPLT00000047207
12456661 - 12742790
286130