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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125090033_125090832_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125090033 - 125090832
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AGCTCCCTGACT
Flanking Amino Acid:
TLYGDGAANQGQIFETYNMA
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
71.2
40.6
Major BPS
61.3
0.28
1
62
30.6
Major PPT
89.8
0.89
0.6
88
22
Minor 5ss
38.1
-1.3
3
47.8
47.9
Minor BPS
61.1
0.43
1.7
75.38
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008450
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041039
125086267 - 125099321
13055
ENSAPLT00000008805
125086267 - 125099321
13055