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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125094739_125095409_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125094739 - 125095409
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TCATCTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCTTCATT
Flanking Amino Acid:
RGFCHLYDGQEACCVGLEVA
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
81.1
26.4
Major BPS
100
1.24
0.5
100
0
Major PPT
70
0.45
1
65.3
39.7
Minor 5ss
37.1
-1.5
3.2
49.9
46.6
Minor BPS
66.5
0.6
1.7
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008450
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008805
125086267 - 125099321
13055
ENSAPLT00000041039
125086267 - 125099321
13055