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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125095584_125096494_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125095584 - 125096494
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATG
5'SS Class:
strong_major
3'SS Sequence:
TTCAACTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
ACTTGTTCAACT
Flanking Amino Acid:
FANEATFEIKKCDLHRLEEG
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
75.3
40.4
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
79.5
0.66
0.9
73
36.8
Minor 5ss
35.9
-1.6
3.2
48.4
47.4
Minor BPS
54.7
0.22
2
74.15
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008450
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041039
125086267 - 125099321
13055
ENSAPLT00000008805
125086267 - 125099321
13055