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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125097864_125099249_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
125097864 - 125099249
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
GCTGCTAACCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGCTGCTAACCT
Flanking Amino Acid:
GPAAAAAGRTGAVSEASRVM
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
55.1
43.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
56.7
0.15
1
47.8
39.5
Minor 5ss
23.7
-3
3.3
29.1
43.5
Minor BPS
46.4
-0.1
2.3
67.9
48.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008450
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041039
125086267 - 125099321
13055