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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12511023_12512276_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12511023 - 12512276
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCT
5'SS Class:
major
3'SS Sequence:
ATTTTAACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAATTTTAACT
Flanking Amino Acid:
SCNRPRARNEGLVVQFTNDN
Intron Amino Acid Position:
1528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
41.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.5
0.64
0.9
71.4
38
Minor 5ss
32.7
-2
3.4
48.4
47.3
Minor BPS
74.4
0.84
1.2
85.12
34.9

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130