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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12512354_12517809_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12512354 - 12517809
Intron Length:
5456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
RTVPLDTTNIRLVQFYVQIG
Intron Amino Acid Position:
1502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
77.9
38.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
31.3
-2.1
2.9
41.4
45
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011979
12456661 - 12742790
286130
ENSAPLT00000047207
12456661 - 12742790
286130