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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125163649_125164274_R

Intron Information:

Intron Rank:
130185
Intron Class:
major
Intron Phase:
Intron Coordinates:
125163649 - 125164274
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TCTTTGTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
82
0.72
0.8
79.3
32.7
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
50
0.08
2.3
74.4
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017246
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030997
125163115 - 125164982
1868